{"id":6440,"date":"2022-10-20T11:19:07","date_gmt":"2022-10-20T15:19:07","guid":{"rendered":"https:\/\/ptp.cloud\/?p=6440"},"modified":"2025-07-22T02:35:28","modified_gmt":"2025-07-22T06:35:28","slug":"high-performance-clustering-cloudops-hpc","status":"publish","type":"post","link":"https:\/\/ptp.cloud\/high-performance-clustering-cloudops-hpc\/","title":{"rendered":"CloudOps Podcast with Myer Media: Focus on the Data and not the Process"},"content":{"rendered":"[et_pb_section fb_built=&#8221;1&#8243; admin_label=&#8221;section&#8221; _builder_version=&#8221;4.16&#8243; da_disable_devices=&#8221;off|off|off&#8221; global_colors_info=&#8221;{}&#8221; da_is_popup=&#8221;off&#8221; da_exit_intent=&#8221;off&#8221; da_has_close=&#8221;on&#8221; da_alt_close=&#8221;off&#8221; da_dark_close=&#8221;off&#8221; da_not_modal=&#8221;on&#8221; da_is_singular=&#8221;off&#8221; da_with_loader=&#8221;off&#8221; da_has_shadow=&#8221;on&#8221;][et_pb_row _builder_version=&#8221;4.25.0&#8243; _module_preset=&#8221;default&#8221; global_colors_info=&#8221;{}&#8221;][et_pb_column type=&#8221;4_4&#8243; _builder_version=&#8221;4.25.0&#8243; _module_preset=&#8221;default&#8221; global_colors_info=&#8221;{}&#8221;][et_pb_code _builder_version=&#8221;4.27.4&#8243; _module_preset=&#8221;default&#8221; global_colors_info=&#8221;{}&#8221;]\n<article><!-- [et_pb_line_break_holder] -->  <pee><!-- [et_pb_line_break_holder] -->    In the biotech and life sciences sectors, data processing speed can make or break research timelines. That\u2019s where high-performance computing (HPC) comes in\u2014enabling organizations to accelerate scientific discovery through scalable compute clusters and automated pipelines. In a recent <a href=\"https:\/\/myermedia.com\" target=\"_blank\" rel=\"noopener noreferrer\">podcast hosted by Jon Myer<\/a>, PTP\u2019s CloudOps Lead Architect <a href=\"https:\/\/www.linkedin.com\/in\/micah-frederick-181b8315\/\" target=\"_blank\" rel=\"noopener noreferrer\">Micah Frederick<\/a> shared how PTP helps clients harness cloud-based HPC for faster, more secure outcomes with <a href=\"https:\/\/ptp.cloud\/services\/\" title=\"managed IT services for life sciences\">managed IT services for life sciences<\/a>.<!-- [et_pb_line_break_holder] -->  <\/pee><!-- [et_pb_line_break_holder] --><!-- [et_pb_line_break_holder] -->  <\/p>\n<div style=\"position: relative; padding-bottom: 56.25%; height: 0; overflow: hidden; margin-top: 1.5em;\"><!-- [et_pb_line_break_holder] -->    <iframe <!-- [et_pb_line_break_holder] -->      src=&#8221;https:\/\/www.youtube-nocookie.com\/embed\/nclRSlaGfVw?rel=0&#8243; <!-- [et_pb_line_break_holder] -->      title=&#8221;High-Performance Clustering: PTP CloudOps + AWS for HPC&#8221; <!-- [et_pb_line_break_holder] -->      loading=&#8221;lazy&#8221; <!-- [et_pb_line_break_holder] -->      style=&#8221;position: absolute; top: 0; left: 0; width: 100%; height: 100%; border: 0;&#8221; <!-- [et_pb_line_break_holder] -->      referrerpolicy=&#8221;strict-origin-when-cross-origin&#8221; <!-- [et_pb_line_break_holder] -->      allow=&#8221;accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share&#8221; <!-- [et_pb_line_break_holder] -->      allowfullscreen><!-- [et_pb_line_break_holder] -->    <\/iframe><!-- [et_pb_line_break_holder] -->  <\/div>\n<p><!-- [et_pb_line_break_holder] --><!-- [et_pb_line_break_holder] -->  <\/p>\n<div style=\"text-align: center; margin: 1.5em 0;\"><!-- [et_pb_line_break_holder] -->    <a href=\"https:\/\/www.youtube.com\/watch?v=nclRSlaGfVw\" target=\"_blank\" rel=\"noopener noreferrer\" title=\"Watch the full video on YouTube\" style=\"text-decoration: none;\"><!-- [et_pb_line_break_holder] -->      <strong>Watch the full video on YouTube<\/strong><!-- [et_pb_line_break_holder] -->      <img src=\"https:\/\/ptp.cloud\/wp-content\/uploads\/2024\/09\/Youtube-icon-300x300.png\" alt=\"Watch high-performance clustering in AWS \u2013 PTP CloudOps\" width=\"26\" height=\"26\" loading=\"lazy\" decoding=\"async\" style=\"vertical-align: middle; margin-left: 8px;\" \/><!-- [et_pb_line_break_holder] -->    <\/a><!-- [et_pb_line_break_holder] -->  <\/div>\n<p><!-- [et_pb_line_break_holder] --><!-- [et_pb_line_break_holder] -->  <\/p>\n<h3>What Is High-Performance Clustering?<\/h3>\n<p><!-- [et_pb_line_break_holder] -->  <pee><!-- [et_pb_line_break_holder] -->    High-performance clustering refers to running complex workflows across many compute nodes simultaneously. This is especially useful in genomics, bioinformatics, and regulated research where processing pipelines can span days\u2014or even weeks\u2014without parallelization.<!-- [et_pb_line_break_holder] -->  <\/pee><!-- [et_pb_line_break_holder] -->  <pee><!-- [et_pb_line_break_holder] -->    PTP\u2019s CloudOps team builds, deploys, and automates these clusters using AWS EC2, Amazon S3, and tools like Nextflow\u2014helping researchers reduce processing time from days to hours.<!-- [et_pb_line_break_holder] -->  <\/pee><!-- [et_pb_line_break_holder] --><!-- [et_pb_line_break_holder] -->  <\/p>\n<h3>Bridging the Academic-to-Industry HPC Gap<\/h3>\n<p><!-- [et_pb_line_break_holder] -->  <pee><!-- [et_pb_line_break_holder] -->    Many researchers are used to academic HPC clusters but struggle to replicate those resources in commercial life sciences settings. PTP bridges that gap by architecting cloud-ready HPC environments for biotech startups and research organizations\u2014ensuring speed, flexibility, and compliance.<!-- [et_pb_line_break_holder] -->  <\/pee><!-- [et_pb_line_break_holder] --><!-- [et_pb_line_break_holder] -->  <\/p>\n<h3>Automation for Scientific Workflows<\/h3>\n<p><!-- [et_pb_line_break_holder] -->  <pee><!-- [et_pb_line_break_holder] -->    Automation is key to making HPC scalable and sustainable. PTP enables automated cluster spin-up and shutdown, dynamic parallelization, and cost controls that reduce waste and accelerate results. This strategy supports faster research pipelines without overburdening IT teams.<!-- [et_pb_line_break_holder] -->  <\/pee><!-- [et_pb_line_break_holder] --><!-- [et_pb_line_break_holder] -->  <\/p>\n<h3>Reducing HPC Costs Without Performance Trade-offs<\/h3>\n<p><!-- [et_pb_line_break_holder] -->  <\/p>\n<ul><!-- [et_pb_line_break_holder] -->    <\/p>\n<li>Run large clusters for short durations<\/li>\n<p><!-- [et_pb_line_break_holder] -->    <\/p>\n<li>Use AWS spot instances to reduce hourly rates<\/li>\n<p><!-- [et_pb_line_break_holder] -->    <\/p>\n<li>Automate shutdowns post-execution to eliminate idle time<\/li>\n<p><!-- [et_pb_line_break_holder] -->  <\/ul>\n<p><!-- [et_pb_line_break_holder] -->  <pee><!-- [et_pb_line_break_holder] -->    These practices give life sciences teams the ability to scale for peak workloads\u2014then scale down cost-efficiently.<!-- [et_pb_line_break_holder] -->  <\/pee><!-- [et_pb_line_break_holder] --><!-- [et_pb_line_break_holder] -->  <\/p>\n<h3>Secure Infrastructure for Regulated Environments<\/h3>\n<p><!-- [et_pb_line_break_holder] -->  <pee><!-- [et_pb_line_break_holder] -->    For organizations operating under HIPAA, GxP, or similar frameworks, security is non-negotiable. PTP implements encryption, access control, and ephemeral environments to isolate sensitive data and reduce exposure.<!-- [et_pb_line_break_holder] -->  <\/pee><!-- [et_pb_line_break_holder] --><!-- [et_pb_line_break_holder] -->  <\/p>\n<h3>Enabling Self-Sufficient Research Teams<\/h3>\n<p><!-- [et_pb_line_break_holder] -->  <pee><!-- [et_pb_line_break_holder] -->    PTP doesn\u2019t just deliver managed services\u2014it educates clients and empowers their teams. From pipeline architecture to optimization strategies, PTP ensures researchers and data engineers can operate with speed, security, and confidence.<!-- [et_pb_line_break_holder] -->  <\/pee><!-- [et_pb_line_break_holder] --><!-- [et_pb_line_break_holder] -->  <\/p>\n<h3>A Look Ahead<\/h3>\n<p><!-- [et_pb_line_break_holder] -->  <pee><!-- [et_pb_line_break_holder] -->    As life sciences research evolves, PTP continues to refine its HPC services to support emerging use cases like protein modeling, multi-omics analysis, and machine learning integration. Whether you&#8217;re migrating workloads or building new cloud-native pipelines, PTP is your partner for scientific computing success.<!-- [et_pb_line_break_holder] -->  <\/pee><!-- [et_pb_line_break_holder] --><\/article>\n<p><!-- [et_pb_line_break_holder] --><!-- [et_pb_line_break_holder] --><\/p>\n<section style=\"background-color: #f4f4f4; padding: 2em; border-radius: 8px; margin-top: 2em;\"><!-- [et_pb_line_break_holder] -->  <\/p>\n<h3>\ud83d\udd0e Transcript Highlights: High-Performance Clustering with PTP<\/h3>\n<p><!-- [et_pb_line_break_holder] -->  <pee><strong>00:00<\/strong> \u2013 Host Jon Myer welcomes Micah Frederick from PTP<\/pee><!-- [et_pb_line_break_holder] -->  <pee><strong>02:59<\/strong> \u2013 What is HPC? How PTP bridges gaps for life sciences teams<\/pee><!-- [et_pb_line_break_holder] -->  <pee><strong>05:18<\/strong> \u2013 When biotech teams need pipeline optimization<\/pee><!-- [et_pb_line_break_holder] -->  <pee><strong>07:15<\/strong> \u2013 Migrating from academic clusters to AWS infrastructure<\/pee><!-- [et_pb_line_break_holder] -->  <pee><strong>11:18<\/strong> \u2013 Automating Nextflow pipelines for scientific research<\/pee><!-- [et_pb_line_break_holder] -->  <pee><strong>16:00<\/strong> \u2013 Cost control via automation and ephemeral compute<\/pee><!-- [et_pb_line_break_holder] -->  <pee><strong>21:18<\/strong> \u2013 Leveraging AWS spot instances to optimize spend<\/pee><!-- [et_pb_line_break_holder] -->  <pee><strong>27:58<\/strong> \u2013 Using AWS Storage Gateway for lab data ingestion<\/pee><!-- [et_pb_line_break_holder] -->  <pee><strong>34:11<\/strong> \u2013 Self-service workflows with GitHub and CodeCommit<\/pee><!-- [et_pb_line_break_holder] -->  <pee><strong>37:32<\/strong> \u2013 How PTP enforces secure, zero-persistence compute<\/pee><!-- [et_pb_line_break_holder] -->  <pee><strong>42:58<\/strong> \u2013 Final thoughts: accelerating secure research with HPC<\/pee><!-- [et_pb_line_break_holder] --><\/section>\n<p><!-- [et_pb_line_break_holder] --><!-- [et_pb_line_break_holder] --><script type=\"application\/ld+json\"><!-- [et_pb_line_break_holder] -->{<!-- [et_pb_line_break_holder] -->  \"@context\": \"https:\/\/schema.org\",<!-- [et_pb_line_break_holder] -->  \"@type\": \"VideoObject\",<!-- [et_pb_line_break_holder] -->  \"name\": \"High-Performance Clustering: PTP CloudOps + AWS for HPC\",<!-- [et_pb_line_break_holder] -->  \"description\": \"PTP\u2019s Micah Frederick joins Jon Myer to discuss high-performance clustering for biotech and life sciences teams. 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They explore how PTP automates research pipelines using Nextflow, AWS Batch, and spot instances. Micah shares how organizations transitioning from academic clusters to the cloud benefit from ephemeral compute models, parallel processing, and cost-efficient infrastructure. He walks through tools like GitHub, CodeCommit, Storage Gateway, and S3 for orchestrating multi-step pipelines. The conversation highlights how PTP secures regulated environments with encrypted, zero-persistence compute and educates clients to manage their own scientific computing workflows. From genomics to global collaboration, HPC built with CloudOps accelerates life sciences innovation at scale.\"<!-- [et_pb_line_break_holder] -->}<!-- [et_pb_line_break_holder] --><\/script><!-- [et_pb_line_break_holder] -->[\/et_pb_code][\/et_pb_column][\/et_pb_row][et_pb_row _builder_version=&#8221;4.27.4&#8243; _module_preset=&#8221;default&#8221; background_color=&#8221;#f2f2f2&#8243; custom_margin=&#8221;27px|auto||auto||&#8221; custom_padding=&#8221;18px|18px|18px|18px|true|true&#8221; border_radii=&#8221;on|5px|5px|5px|5px&#8221; locked=&#8221;off&#8221; global_colors_info=&#8221;{}&#8221;][et_pb_column type=&#8221;4_4&#8243; _builder_version=&#8221;4.27.4&#8243; _module_preset=&#8221;default&#8221; global_colors_info=&#8221;{}&#8221;][et_pb_text _builder_version=&#8221;4.27.4&#8243; _module_preset=&#8221;default&#8221; global_colors_info=&#8221;{}&#8221;]\n<h2>Connect with PTP<\/h2>\n<p>If you&#8217;re interested in learning more about PTP&#8217;s approach to high-performance clustering and automation, be sure to connect with them. Their expertise can help you navigate the complexities of HPC and achieve your business objectives with confidence.<\/p>\n<ul>\n<li><a href=\"https:\/\/ptp.cloud\/data-management-webinar-recording-from-zero-to-science\/\">From Zero to Science with Quilt Data<\/a><\/li>\n<li><a href=\"https:\/\/ptp.cloud\/automating-reserved-instances\/\">Cost Optimization for biotechnology &#8211; Automating Reserved Instances<\/a><\/li>\n<li><a href=\"https:\/\/ptp.cloud\/life-sciences-case-study-adaptive-phage-therapeutics\/\">Case Study: Adaptive Phage Therapeutics<\/a><\/li>\n<\/ul>\n[\/et_pb_text][dsm_button button_one_text=&#8221;\ud83d\udc49 Request your Free Cloud Assessment&#8221; button_one_url=&#8221;https:\/\/ptp.cloud\/services\/cloudops\/cloud-assessment\/&#8221; button_two_text=&#8221;\ud83d\udc49 PTP&#8217;s AWS Marketplace Offers&#8221; button_two_url=&#8221;https:\/\/aws.amazon.com\/marketplace\/seller-profile?id=40aef862-90e2-4a5f-9d98-2ef74b6cbf15&#8243; button_alignment=&#8221;left&#8221; separator_text=&#8221;or explore&#8221; _builder_version=&#8221;4.27.4&#8243; _module_preset=&#8221;default&#8221; custom_button_one=&#8221;on&#8221; button_one_text_size=&#8221;14px&#8221; button_one_text_color=&#8221;#ffffff&#8221; button_one_bg_color=&#8221;#0eabf4&#8243; button_one_border_width=&#8221;0px&#8221; button_one_border_radius=&#8221;3px&#8221; button_one_font=&#8221;|600|||||||&#8221; button_one_use_icon=&#8221;off&#8221; button_one_custom_margin=&#8221;|11px|||false|false&#8221; custom_button_two=&#8221;on&#8221; button_two_text_size=&#8221;14px&#8221; button_two_text_color=&#8221;#ffffff&#8221; button_two_bg_color=&#8221;#0eabf4&#8243; button_two_border_width=&#8221;0px&#8221; button_two_border_radius=&#8221;3px&#8221; button_two_font=&#8221;|600|||||||&#8221; button_two_use_icon=&#8221;off&#8221; custom_margin=&#8221;|||0px|false|false&#8221; box_shadow_style_button_one=&#8221;preset2&#8243; box_shadow_style_button_two=&#8221;preset2&#8243; box_shadow_blur_button_two=&#8221;19px&#8221; global_colors_info=&#8221;{}&#8221;][\/dsm_button][\/et_pb_column][\/et_pb_row][\/et_pb_section]\n<span class=\"et_bloom_bottom_trigger\"><\/span>","protected":false},"excerpt":{"rendered":"<p>Explore the world of high-performance clustering with PTP&#8217;s CloudOps Lead Architect, Micah Frederick, as he delves into automation, cost optimization, and security on the Myer Media podcast.<\/p>\n","protected":false},"author":2,"featured_media":10290,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"_et_pb_use_builder":"on","_et_pb_old_content":"Thank you to Jon Myer of <a href=\"https:\/\/jonmyer.com\/\">Myer Media<\/a> for having <a href=\"https:\/\/www.linkedin.com\/in\/micah-frederick-181b8315\/\">Micah Frederick<\/a>, PTP's CloudOps Lead Architect, on your podcast! \u00a0Jon and Micah talked about PTP's CloudOps customer engagement, what is High Performance Computing, how to accelerate workflow time through parallel computing, automation for resource turn-up and turn-down, the security of data and much more.\r\n\r\nHigh-Performance Computing (Clusters) or HPC within the biotechnology isn't new. Processing large amounts of data take time and go through numerous processes before it can be analyzed. The key here is \"It takes time\" from hours to days or even weeks waiting for the output. What if you could simplify the processing pipeline from days to hours, and what if you didn't have to worry about the infrastructure involved and just the output? \u00a0Check out the conversation with Jon and Micah and learn!\r\n\r\n\u00a0\r\n\r\n[embed]https:\/\/youtu.be\/nclRSlaGfVw[\/embed]\r\n\r\n\u00a0\r\n<h3>Interested in more videos about data science for biotechnology?<\/h3>\r\n<ul>\r\n \t<li><a href=\"https:\/\/ptp.cloud\/data-management-webinar-recording-from-zero-to-science\/\">From Zero to Science with Quilt Data<\/a><\/li>\r\n \t<li><a href=\"https:\/\/ptp.cloud\/automating-reserved-instances\/\">Cost Optimization for biotechnology - Automating Reserved Instances<\/a><\/li>\r\n \t<li><a href=\"https:\/\/ptp.cloud\/life-sciences-case-study-adaptive-phage-therapeutics\/\">Case Study: Adaptive Phage Therapeutics<\/a><\/li>\r\n<\/ul>\r\n\u00a0\r\n\r\n\u00a0","_et_gb_content_width":"","content-type":"","_monsterinsights_skip_tracking":false,"_monsterinsights_sitenote_active":false,"_monsterinsights_sitenote_note":"","_monsterinsights_sitenote_category":0,"_jetpack_memberships_contains_paid_content":false,"footnotes":""},"categories":[9,34,83],"tags":[],"table_tags":[],"class_list":["post-6440","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-cloudops-archive","category-finops-archive","category-learning-videos-archive"],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v26.1.1 - https:\/\/yoast.com\/wordpress\/plugins\/seo\/ -->\n<title>High-Performance Clustering in the Cloud: How PTP Speeds Up Scientific Computing<\/title>\n<meta name=\"description\" content=\"Discover how PTP helps life sciences companies accelerate HPC workloads with cloud automation, cost optimization, and secure data processing.\" \/>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/ptp.cloud\/high-performance-clustering-cloudops-hpc\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"High-Performance Clustering in the Cloud: How PTP Speeds Up Scientific Computing\" \/>\n<meta property=\"og:description\" content=\"Discover how PTP helps life sciences companies accelerate HPC workloads with cloud automation, cost optimization, and secure data processing.\" \/>\n<meta property=\"og:url\" content=\"https:\/\/ptp.cloud\/high-performance-clustering-cloudops-hpc\/\" \/>\n<meta property=\"og:site_name\" content=\"PTP | Cloud Experts | Biotech Enablers\" \/>\n<meta property=\"article:publisher\" content=\"https:\/\/www.facebook.com\/PTPCloud\" \/>\n<meta property=\"article:published_time\" content=\"2022-10-20T15:19:07+00:00\" 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