{"id":7131,"date":"2023-09-19T21:20:26","date_gmt":"2023-09-20T01:20:26","guid":{"rendered":"https:\/\/ptp.cloud\/?p=7131"},"modified":"2025-06-29T19:37:59","modified_gmt":"2025-06-29T23:37:59","slug":"amazon-healthomics-end-to-end-workshop-recording","status":"publish","type":"post","link":"https:\/\/ptp.cloud\/amazon-healthomics-end-to-end-workshop-recording\/","title":{"rendered":"Introduction to AWS HealthOmics: Streamlining Bioinformatics with Amazon&#8217;s Latest Service"},"content":{"rendered":"[et_pb_section fb_built=&#8221;1&#8243; admin_label=&#8221;section&#8221; _builder_version=&#8221;4.16&#8243; custom_padding=&#8221;||2px|||&#8221; da_disable_devices=&#8221;off|off|off&#8221; global_colors_info=&#8221;{}&#8221; da_is_popup=&#8221;off&#8221; da_exit_intent=&#8221;off&#8221; da_has_close=&#8221;on&#8221; da_alt_close=&#8221;off&#8221; da_dark_close=&#8221;off&#8221; da_not_modal=&#8221;on&#8221; da_is_singular=&#8221;off&#8221; da_with_loader=&#8221;off&#8221; da_has_shadow=&#8221;on&#8221;][et_pb_row _builder_version=&#8221;4.25.0&#8243; _module_preset=&#8221;default&#8221; custom_margin=&#8221;15px|auto||auto||&#8221; custom_padding=&#8221;4px||0px|||&#8221; global_colors_info=&#8221;{}&#8221;][et_pb_column type=&#8221;4_4&#8243; _builder_version=&#8221;4.25.0&#8243; _module_preset=&#8221;default&#8221; global_colors_info=&#8221;{}&#8221;][et_pb_text _builder_version=&#8221;4.27.4&#8243; _module_preset=&#8221;default&#8221; min_height=&#8221;1382.4px&#8221; hover_enabled=&#8221;0&#8243; global_colors_info=&#8221;{}&#8221; sticky_enabled=&#8221;0&#8243;]\n<article>\n<p>Catch highlights from the AWS HealthOmics End-to-End Workshop hosted by <a href=\"https:\/\/www.linkedin.com\/in\/gary-derheim-86439\/\" target=\"_blank\" rel=\"noopener noreferrer\">Gary Derheim<\/a> of PTP, featuring <a href=\"https:\/\/www.linkedin.com\/in\/ajeskey\/\" target=\"_blank\" rel=\"noopener noreferrer\">Aaron Jeskey<\/a> from PTP and <a href=\"https:\/\/www.linkedin.com\/in\/ariella-sasson\/\" target=\"_blank\" rel=\"noopener noreferrer\">Ariella Sasson<\/a>, <a href=\"https:\/\/aws.amazon.com\/healthomics\/\" target=\"_blank\" rel=\"noopener noreferrer\">Amazon HealthOmics<\/a> Principal Solutions Architect, along with AWS architects Itzik Paz and Sumit Deshpande.<\/p>\n<div style=\"position: relative; padding-bottom: 56.25%; height: 0; overflow: hidden;\">\n    <iframe style=\"position: absolute; top: 0; left: 0; width: 100%; height: 100%;\" src=\"https:\/\/www.youtube-nocookie.com\/embed\/MDL0bFpv-nQ?rel=0\" title=\"Amazon HealthOmics End-to-End Workshop Recording \u2013 PTP and AWS\" frameborder=\"0\" allow=\"accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share\" allowfullscreen loading=\"lazy\" referrerpolicy=\"strict-origin-when-cross-origin\"><\/iframe>\n  <\/div>\n<p style=\"text-align: center;\">\n    <a href=\"https:\/\/www.youtube.com\/watch?v=MDL0bFpv-nQ\" target=\"_blank\" rel=\"noopener noreferrer\" title=\"Watch the full video on YouTube\" style=\"text-decoration: none;\"><br \/>\n      <strong>Watch the full video on YouTube<\/strong><img src=\"https:\/\/ptp.cloud\/wp-content\/uploads\/2024\/09\/Youtube-icon-300x300.png\" alt=\"YouTube logo for PTP AWS HealthOmics workshop video\" width=\"26\" height=\"26\" loading=\"lazy\" decoding=\"async\" style=\"vertical-align: middle; margin-left: 8px;\" \/><br \/>\n    <\/a>\n  <\/p>\n<h2>What is AWS HealthOmics?<\/h2>\n<p><a href=\"https:\/\/aws.amazon.com\/healthomics\/\" target=\"_blank\" rel=\"noopener noreferrer\">AWS HealthOmics<\/a> is a purpose-built service designed for the healthcare and life sciences industry, offering a scalable platform to store, query, and analyze genomic and other biological data. Initially launched as Amazon Omix at <a href=\"https:\/\/reinvent.awsevents.com\/\" target=\"_blank\" rel=\"noopener noreferrer\">re:Invent 2022<\/a>, the service was renamed at the <a href=\"https:\/\/aws.amazon.com\/events\/summits\/new-york\/\" target=\"_blank\" rel=\"noopener noreferrer\">New York Summit in July 2023<\/a>.<\/p>\n<h2>Addressing Common Challenges in Genomics<\/h2>\n<p>Researchers often face challenges managing the size, complexity, and security of genomic data. AWS HealthOmics provides a suite of tools that simplify data storage, analysis, and governance for genomics workflows.<\/p>\n<h2>Benefits of AWS HealthOmics<\/h2>\n<ul>\n<li><strong>Multi-omics and Multimodal Analysis<\/strong>: Enables researchers to integrate genomic data with other biological data types.<\/li>\n<li><strong>Purpose-built Data Storage<\/strong>: Optimized for petabyte-scale storage with cost-effective access and archiving.<\/li>\n<li><strong>Scalability and Automation<\/strong>: Auto-scale compute resources and automate workflow implementation.<\/li>\n<li><strong>Enhanced Security and Compliance<\/strong>: Built-in support for <a href=\"https:\/\/www.hhs.gov\/hipaa\/index.html\" target=\"_blank\" rel=\"noopener noreferrer\">HIPAA<\/a> and <a href=\"https:\/\/gdpr.eu\/\" target=\"_blank\" rel=\"noopener noreferrer\">GDPR<\/a> compliance.<\/li>\n<\/ul>\n<h2>Core Components of HealthOmics<\/h2>\n<ul>\n<li><strong>Omics Storage<\/strong>: Secure, compliant storage for FASTQ, BAM, and CRAM files with automatic archiving.<\/li>\n<li><strong>Bioinformatics Workflows<\/strong>: Use languages like Nextflow, CWL, and WDL to run analyses at scale.<\/li>\n<li><strong>Variant and Annotation Data<\/strong>: Store and query variant and annotation data using <a href=\"https:\/\/aws.amazon.com\/athena\/\" target=\"_blank\" rel=\"noopener noreferrer\">Amazon Athena<\/a> for rapid querying.<\/li>\n<\/ul>\n<h2>Ready-to-Run Workflows and Analytics<\/h2>\n<p>HealthOmics offers pre-configured, ready-to-run workflows priced per execution. These can also be customized to meet specific research needs. Genomic data can be transformed for queryable analytics, enabling multi-modal analysis and collaboration.<\/p>\n<h2>Applications and Use Cases<\/h2>\n<ul>\n<li><strong>Population Sequencing<\/strong>: Study genomic variation and connect it to phenotypes.<\/li>\n<li><strong>Clinical Genomics<\/strong>: Support precision medicine with reproducible workflows.<\/li>\n<li><strong>Accelerated Clinical Trials<\/strong>: Integrate genomics into trials to identify new biomarkers and reduce timelines.<\/li>\n<li><strong>Enhanced Research and Innovation<\/strong>: Improve access to clean, secure genomic data for scientific breakthroughs.<\/li>\n<\/ul>\n<h2>Conclusion<\/h2>\n<p>From <a href=\"\/services\/cloudops\/cloud-engineering\/\" title=\"scientific computing IT support\">scientific computing IT support<\/a> to HIPAA-compliant genomic storage, AWS HealthOmics offers a robust foundation for modern genomics. By simplifying how data is stored, queried, and analyzed, it empowers researchers to focus on innovation and outcomes.<\/p>\n<p>Want to explore more? Learn <a href=\"https:\/\/ptp.cloud\/bioinformatics-pipelines\/\">how PTP automates and optimizes bioinformatics pipelines<\/a> or check out <a href=\"https:\/\/aws.amazon.com\/marketplace\/pp\/prodview-it7fjq6rqix74?sr=0-13&amp;ref_=beagle&amp;applicationId=AWSMPContessa\" target=\"_blank\" rel=\"noopener noreferrer\">our CloudOps solution for life sciences on AWS Marketplace<\/a>.<\/p>\n<\/article>\n<p><script type=\"application\/ld+json\">\n{\n  \"@context\": \"https:\/\/schema.org\",\n  \"@type\": \"VideoObject\",\n  \"name\": \"Amazon HealthOmics End-to-End Workshop Recording \u2013 PTP and AWS\",\n  \"description\": \"Ariella Sasson, Aaron Jeskey, and AWS architects explore HealthOmics at scale in this full workshop recording. 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Watch the full video on YouTube What is AWS HealthOmics? AWS HealthOmics is a purpose-built service designed for the [&hellip;]<\/p>\n","protected":false},"author":2,"featured_media":12806,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"_et_pb_use_builder":"on","_et_pb_old_content":"[embed]https:\/\/youtu.be\/MDL0bFpv-nQ[\/embed]\r\n\r\n\u00a0\r\n\r\nOverview of Amazon HealthOmics during the End-to-End Workshop by Ariella Sasson, Principal Solutions Architect, AWS. Supporting Architects Itzik Paz and Sumit Deshpande of AWS and Aaron Jeskey of PTP. Hosted by Gary Derheim of PTP.\r\n\r\n\u00a0\r\n<h3><a href=\"https:\/\/youtu.be\/Y7fTpL9BWVY\">What is PTP's CloudOps for Life Sciences Service?<\/a><\/h3>\r\n\u00a0\r\n<h3><a href=\"https:\/\/ptp.cloud\/bioinformatics-pipelines\/\">How Does PTP Automate and Optimize Bioinformatics 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